From your Shopify website you can charge tax on a product basis. When this option is enabled on your store, Veeqo will calculate VAT on your Shopify orders.
 

How to enable product taxes?

1. From the Products section in Shopify, select the product you would like to charge taxes on;

2. In the pricing section of the product you will see an option for Charge Taxes On This Product;

This would need to be applied on a product by product basis.

Once this option has been applied to your products on your Shopify store, any NEW orders that come into Veeqo will have the calculated VAT amount of the order.

3. Make sure that you have country taxes set on your Shopify store. You can get to this by going to Settings>Taxes.